In this research, it was aimed to reveal plant diversity which is found in aquatic ecosystems of Azerbaijan. The Azerbaijani territory in terms of plant diversity in the Caucasus region is far from the other regions with its rich richness. In the Azerbaijani forest which is richer than the neighboring countries by flora and vegetation, water-swamp ecosystems cover wide areas along with forest, step, grass, frigana, aubalpine and alpine meadows. Land studies related to this subject are carried out twice a month during April-October between 2013 and 2015 in accordance with the methods of land geobotany. These ecosystems are Nahcivan are found in wider areas in the flat sections. It has been revealed that 502 taxa belong to 62 families and 208 glands in the water-swamp flora. This includes 11.2% of the total number of species of Azerbaijan flora. Poaceae, Cyperaceae, Ranunculaceae, Fabaceae, Potamogetonaceae, Juncaceae, Salicaceae, Chenopodiaceae, and Brassicaseae are more abundant in the water-swamp flora. There are 12 trees, 412 herbaceous plants with an aquatic environment. In the in-water plant assosations: Ruppium maritimae, Lemnetum minoris, Lemnetum gibbae, Potametum pectinate, Potametum lucentis, Potametum perfoliati, Potameto-Najadetum, Myriophylletum spicati, Ceratophylletum demersi, Potametum natantis, Polygonetum amphibii, Najadetum marianae, Myriophylletum verticillati; In the watery coastal mud flats: Phragmatum australis, Typho angustifolia-Phragmatum australis, Scirpo-Phragmatum australis, Potamogetoneto-Schoenopletetum litoralis, Butomo-Scirpetum maritimi, Bolboschoeneto-Sparganietum erecti, Butometum umbellati, Carietum paniculatae, Paspalium paspalioides; In the salt habitats: Halocnemum strobilacei, Junco-Tamarici parviflorae, Temaricetum romassisimi, Salicornietum europae, Junetum maritimi, Phragmito-Junsetum maritimi, Carici-Halocnemetum strobilacei, Alopecuretum arundunacea et all.